Search Skills

Analyzes ATAC-seq data to extract nucleosome positions and occupancy patterns using bioinformatics tools for chromatin organization research.

Performs DNA methylation analysis using methylKit in R, including data import, filtering, normalization, and statistical comparison for methylation pattern studies.

Performs statistical analysis on metabolomics data including univariate testing, PCA, PLS-DA, and biomarker discovery for differential metabolite identification and classification models.

Performs genomic interval proximity operations including nearest feature search, window-based queries, and interval extension for TSS analysis and enhancer assignment.

Systematically reviews code to assess documentation quality and enforce code reuse standards in development workflows.

Generates meaningful commit messages for Git staged changes, enhancing version control clarity and collaboration in software development.

Automates creation of development branches in GitHub for specific issues using standardized naming conventions to streamline development workflows.

Generates detailed implementation plans with file-level code changes and test strategies for software development projects.

Automates incremental progress tracking and milestone creation for code implementation, including automatic LOC monitoring and checkpoint management.

Automates file movement and renaming while updating all code and documentation references to maintain project integrity.

Guides AI agents in creating consistent technical documentation for design docs, READMEs, code interfaces, and test cases.

Automates GitHub pull request creation with context-aware formatting and tag selection from conversation context.

Automates GitHub issue creation from conversational context with proper formatting and label selection.

Provides security-focused analysis and actionable recommendations for smart contract development based on Trail of Bits best practices, covering architecture, upgradeability, and testing.

Provides a methodology for auditing Solidity smart contracts to identify and address security vulnerabilities.

Automates Discord channel activity monitoring and stores notable items in memory for continuous access during heartbeat cycles.

Automates prioritization of project tasks by analyzing GitHub and Discord activity to identify urgent issues and project status.

Provides comprehensive testing utilities for Foundry smart contract tests, including fuzz testing, gas benchmarks, and naming conventions.

Provides deep design principles for Towns Protocol smart contracts, guiding new facet creation, refactoring, and architectural decisions.

Configures ReinforceNow training runs using config.yml and train.jsonl, and converts HuggingFace datasets to ReinforceNow format.

Provides command-line interface for Reinforcement Learning from Human Feedback (RLHF) training, enabling project setup, training runs, and model management.

Enables writing reward functions for Reinforcement Learning training in ReinforceNow, including @reward decorators and LLM-based evaluation.

Formats training data in JSONL format for ReinforceNow, handling entry structures, tools, rewards, and sandbox setup.

Generates tool functions for ReinforceNow agent training, supporting @tool decorators and tools.py integration in agent development.